#include <alignmodel.h>

Inheritance diagram for PatternAlignmentModel< FeatureType >:

Public Types
typedef PatternMap< PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType > >::iterator	iterator

typedef PatternMap< PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType > >::const_iterator	const_iterator

Public Types inherited from PatternMap< PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType > >
typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::iterator	iterator

typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::const_iterator	const_iterator

Public Types inherited from PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >
typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::iterator	iterator

typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::const_iterator	const_iterator

Public Types inherited from PatternStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, uint64_t, Pattern >
typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::iterator	iterator

typedef std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >::const_iterator	const_iterator

Public Member Functions
	PatternAlignmentModel ()

	PatternAlignmentModel (std::istream f, PatternModelOptions options, PatternModelInterface constrainmodel=NULL)

	PatternAlignmentModel (const std::string filename, const PatternModelOptions options, PatternModelInterface *constrainmodel=NULL)

virtual int	getmodeltype () const

virtual int	getmodelversion () const

virtual size_t	size () const

virtual bool	has (const Pattern &pattern) const

virtual bool	has (const PatternPointer &pattern) const

virtual void	load (std::string filename, const PatternModelOptions options, PatternModelInterface *constrainmodel=NULL)

virtual void	load (std::istream f, PatternModelOptions options, PatternModelInterface constrainmodel=NULL)

PatternModelInterface *	getinterface ()

void	write (std::ostream *out)

void	write (const std::string filename)

virtual int	maxlength () const

virtual int	minlength () const

virtual int	occurrencecount (const Pattern &pattern)

virtual PatternFeatureVectorMap< FeatureType > *	getdata (const Pattern &pattern, bool makeifnew=false)

virtual PatternFeatureVectorMap< FeatureType > *	getdata (const PatternPointer &patternpointer, bool makeifnew=false)

int	types () const

int	tokens () const

unsigned char	type () const

unsigned char	version () const

virtual bool	has (const Pattern &pattern, const Pattern &pattern2)

virtual bool	has (const PatternPointer &patternpointer, const PatternPointer &patternpointer2)

virtual PatternFeatureVector< FeatureType > *	getdata (const Pattern &pattern, const Pattern &pattern2, bool makeifnew=false)

void	add (const Pattern &pattern, const Pattern &pattern2, std::vector< FeatureType > &features, bool checkifexists=true)

virtual void	printmodel (std::ostream *out, ClassDecoder &sourcedecoder, ClassDecoder &targetdecoder)

virtual void	print (std::ostream *out, ClassDecoder &sourcedecoder, ClassDecoder &targetdecoder)

Public Member Functions inherited from PatternMap< PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType > >
	PatternMap ()

void	insert (const Pattern &pattern, PatternFeatureVectorMap< FeatureType > &value)

void	insert (const Pattern &pattern)

bool	has (const Pattern &pattern) const

bool	has (const PatternPointer &pattern) const

size_t	size () const

void	reserve (size_t s)

PatternFeatureVectorMap< FeatureType > &	operator[] (const Pattern &pattern)

PatternFeatureVectorMap< FeatureType > &	operator[] (const PatternPointer &pattern)

iterator	begin ()

const_iterator	begin () const

iterator	end ()

const_iterator	end () const

iterator	find (const Pattern &pattern)

const_iterator	find (const Pattern &pattern) const

iterator	find (const PatternPointer &pattern)

const_iterator	find (const PatternPointer &pattern) const

bool	erase (const Pattern &pattern)

iterator	erase (const_iterator position)

Public Member Functions inherited from PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >
	PatternMapStore ()

virtual	~PatternMapStore ()

void	read (std::istream in, int MINTOKENS=0, int MINLENGTH=0, int MAXLENGTH=999999, PatternStoreInterface constrainstore=NULL, bool DONGRAMS=true, bool DOSKIPGRAMS=true, bool DOFLEXGRAMS=true, bool DORESET=false, bool DEBUG=false)

void	read (std::string filename, int MINTOKENS=0, int MINLENGTH=0, int MAXLENGTH=999999, PatternStoreInterface *constrainstore=NULL, bool DONGRAMS=true, bool DOSKIPGRAMS=true, bool DOFLEXGRAMS=true, bool DORESET=false, bool DEBUG=false)

Public Member Functions inherited from PatternStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, uint64_t, Pattern >
	PatternStore ()

virtual	~PatternStore ()

virtual void	attachcorpus (unsigned char *corpusstart, unsigned int corpussize)

virtual void	attachcorpus (const IndexedCorpus &corpus)

virtual void	detachcorpus ()

unsigned char *	getcorpus () const

unsigned int	getcorpussize () const

virtual void	use_v1_format ()

virtual PatternStoreInterface *	getstoreinterface ()

Protected Member Functions
virtual void	postread (const PatternModelOptions options)

Protected Attributes
unsigned char	model_type

unsigned char	model_version

uint64_t	totaltokens

uint64_t	totaltypes

int	maxn

int	minn

Protected Attributes inherited from PatternMap< PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType > >
std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >	data

Protected Attributes inherited from PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >
PatternFeatureVectorMapHandler< FeatureType >	valuehandler

Protected Attributes inherited from PatternStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, uint64_t, Pattern >
unsigned char *	corpusstart

unsigned int	corpussize

unsigned char	classencodingversion

int	patterntype

Member Typedef Documentation

template<class FeatureType>

typedef PatternMap<PatternFeatureVectorMap<FeatureType>,PatternFeatureVectorMapHandler<FeatureType> >::const_iterator PatternAlignmentModel< FeatureType >::const_iterator

template<class FeatureType>

typedef PatternMap<PatternFeatureVectorMap<FeatureType>,PatternFeatureVectorMapHandler<FeatureType> >::iterator PatternAlignmentModel< FeatureType >::iterator

Constructor & Destructor Documentation

template<class FeatureType>

PatternAlignmentModel< FeatureType >::PatternAlignmentModel ( )

inline

template<class FeatureType>

PatternAlignmentModel< FeatureType >::PatternAlignmentModel	(	std::istream *	f,
		PatternModelOptions	options,
		PatternModelInterface *	constrainmodel = `NULL`
	)

inline

template<class FeatureType>

PatternAlignmentModel< FeatureType >::PatternAlignmentModel	(	const std::string	filename,
		const PatternModelOptions	options,
		PatternModelInterface *	constrainmodel = `NULL`
	)

inline

Member Function Documentation

template<class FeatureType>

void PatternAlignmentModel< FeatureType >::add	(	const Pattern &	pattern,
		const Pattern &	pattern2,
		std::vector< FeatureType > &	features,
		bool	checkifexists = `true`
	)

inline

template<class FeatureType>

virtual PatternFeatureVectorMap<FeatureType>* PatternAlignmentModel< FeatureType >::getdata	(	const Pattern &	pattern,
		bool	makeifnew = `false`
	)

inlinevirtual

template<class FeatureType>

virtual PatternFeatureVectorMap<FeatureType>* PatternAlignmentModel< FeatureType >::getdata	(	const PatternPointer &	patternpointer,
		bool	makeifnew = `false`
	)

inlinevirtual

template<class FeatureType>

virtual PatternFeatureVector<FeatureType>* PatternAlignmentModel< FeatureType >::getdata	(	const Pattern &	pattern,
		const Pattern &	pattern2,
		bool	makeifnew = `false`
	)

inlinevirtual

template<class FeatureType>

PatternModelInterface* PatternAlignmentModel< FeatureType >::getinterface ( )

inline

template<class FeatureType>

virtual int PatternAlignmentModel< FeatureType >::getmodeltype ( ) const

inlinevirtual

template<class FeatureType>

virtual int PatternAlignmentModel< FeatureType >::getmodelversion ( ) const

inlinevirtual

template<class FeatureType>

virtual bool PatternAlignmentModel< FeatureType >::has ( const Pattern & ) const

inlinevirtual

Does the pattern occur in the pattern store?

Implements PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >.

template<class FeatureType>

virtual bool PatternAlignmentModel< FeatureType >::has ( const PatternPointer & ) const

inlinevirtual

Does the pattern occur in the pattern store?

Implements PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >.

template<class FeatureType>

virtual bool PatternAlignmentModel< FeatureType >::has	(	const Pattern &	pattern,
		const Pattern &	pattern2
	)

inlinevirtual

template<class FeatureType>

virtual bool PatternAlignmentModel< FeatureType >::has	(	const PatternPointer &	patternpointer,
		const PatternPointer &	patternpointer2
	)

inlinevirtual

template<class FeatureType>

virtual void PatternAlignmentModel< FeatureType >::load	(	std::string	filename,
		const PatternModelOptions	options,
		PatternModelInterface *	constrainmodel = `NULL`
	)

inlinevirtual

template<class FeatureType>

virtual void PatternAlignmentModel< FeatureType >::load	(	std::istream *	f,
		PatternModelOptions	options,
		PatternModelInterface *	constrainmodel = `NULL`
	)

inlinevirtual

template<class FeatureType>

virtual int PatternAlignmentModel< FeatureType >::maxlength ( ) const

inlinevirtual

template<class FeatureType>

virtual int PatternAlignmentModel< FeatureType >::minlength ( ) const

inlinevirtual

template<class FeatureType>

virtual int PatternAlignmentModel< FeatureType >::occurrencecount ( const Pattern & pattern )

inlinevirtual

template<class FeatureType>

virtual void PatternAlignmentModel< FeatureType >::postread ( const PatternModelOptions options )

inlineprotectedvirtual

template<class FeatureType>

virtual void PatternAlignmentModel< FeatureType >::print	(	std::ostream *	out,
		ClassDecoder &	sourcedecoder,
		ClassDecoder &	targetdecoder
	)

inlinevirtual

template<class FeatureType>

virtual void PatternAlignmentModel< FeatureType >::printmodel	(	std::ostream *	out,
		ClassDecoder &	sourcedecoder,
		ClassDecoder &	targetdecoder
	)

inlinevirtual

template<class FeatureType>

virtual size_t PatternAlignmentModel< FeatureType >::size ( ) const

inlinevirtual

How many patterns are in the pattern store?

Implements PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >.

template<class FeatureType>

int PatternAlignmentModel< FeatureType >::tokens ( ) const

inline

template<class FeatureType>

unsigned char PatternAlignmentModel< FeatureType >::type ( ) const

inline

template<class FeatureType>

int PatternAlignmentModel< FeatureType >::types ( ) const

inline

template<class FeatureType>

unsigned char PatternAlignmentModel< FeatureType >::version ( ) const

inline

template<class FeatureType>

void PatternAlignmentModel< FeatureType >::write ( std::ostream * out )

inlinevirtual

Write the map to stream output (in binary format)

Reimplemented from PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >.

template<class FeatureType>

void PatternAlignmentModel< FeatureType >::write ( const std::string filename )

inlinevirtual

Write the map to file (in binary format)

Reimplemented from PatternMapStore< std::unordered_map< Pattern, PatternFeatureVectorMap< FeatureType > >, PatternFeatureVectorMap< FeatureType >, PatternFeatureVectorMapHandler< FeatureType >, uint64_t, Pattern >.

Member Data Documentation

template<class FeatureType>

int PatternAlignmentModel< FeatureType >::maxn

protected

template<class FeatureType>

int PatternAlignmentModel< FeatureType >::minn

protected

template<class FeatureType>

unsigned char PatternAlignmentModel< FeatureType >::model_type

protected

template<class FeatureType>

unsigned char PatternAlignmentModel< FeatureType >::model_version

protected

template<class FeatureType>

uint64_t PatternAlignmentModel< FeatureType >::totaltokens

protected

template<class FeatureType>

uint64_t PatternAlignmentModel< FeatureType >::totaltypes

protected

The documentation for this class was generated from the following file:

include/alignmodel.h

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation